%def name="common_javascripts(repository)">
%def>
<%def name="container_javascripts()">
%def>
<%def name="render_repository_type_select_field( repository_type_select_field, render_help=True )">
%def>
<%def name="render_sharable_str( repository, changeset_revision=None )">
<%
from tool_shed.util.shed_util_common import generate_sharable_link_for_repository_in_tool_shed
sharable_link = generate_sharable_link_for_repository_in_tool_shed( repository, changeset_revision=changeset_revision )
%>
${sharable_link}
%def>
<%def name="render_clone_str( repository )">
<%
from tool_shed.util.common_util import generate_clone_url_for_repository_in_tool_shed
clone_str = generate_clone_url_for_repository_in_tool_shed( trans.user, repository )
%>
hg clone ${clone_str}
%def>
<%def name="render_folder( folder, folder_pad, parent=None, row_counter=None, is_root_folder=False, render_repository_actions_for='tool_shed' )">
<%
encoded_id = trans.security.encode_id( folder.id )
if is_root_folder:
pad = folder_pad
expander = h.url_for("/static/images/silk/resultset_bottom.png")
folder_img = h.url_for("/static/images/silk/folder_page.png")
else:
pad = folder_pad + 20
expander = h.url_for("/static/images/silk/resultset_next.png")
folder_img = h.url_for("/static/images/silk/folder.png")
my_row = None
%>
%if not is_root_folder:
<%
if parent is None:
bg_str = 'bgcolor="#D8D8D8"'
else:
bg_str = ''
%>
<%
col_span_str = ''
folder_label = str( folder.label )
if folder.datatypes:
col_span_str = 'colspan="4"'
elif folder.label == 'Missing tool dependencies':
if folder.description:
folder_label = "%s - %s" % ( folder_label, folder.description )
else:
folder_label = "%s - repository tools require handling of these missing dependencies" % folder_label
col_span_str = 'colspan="5"'
elif folder.label in [ 'Installed repository dependencies', 'Repository dependencies', 'Missing repository dependencies' ]:
if folder.description:
folder_label = "%s - %s" % ( folder_label, folder.description )
elif folder.label not in [ 'Installed repository dependencies' ] and folder.parent.label not in [ 'Installation errors' ]:
folder_label = "%s - installation of these additional repositories is required" % folder_label
if trans.webapp.name == 'galaxy':
col_span_str = 'colspan="4"'
elif folder.label == 'Invalid repository dependencies':
folder_label = "%s - click the repository dependency to see why it is invalid" % folder_label
elif folder.label == 'Invalid tool dependencies':
folder_label = "%s - click the tool dependency to see why it is invalid" % folder_label
elif folder.label == 'Valid tools':
col_span_str = 'colspan="3"'
if folder.description:
folder_label = "%s - %s" % ( folder_label, folder.description )
else:
folder_label = "%s - click the name to preview the tool and use the pop-up menu to inspect all metadata" % folder_label
elif folder.invalid_tools:
if trans.webapp.name == 'tool_shed':
folder_label = "%s - click the tool config file name to see why the tool is invalid" % folder_label
elif folder.tool_dependencies:
if folder.description:
folder_label = "%s - %s" % ( folder_label, folder.description )
else:
folder_label = "%s - repository tools require handling of these dependencies" % folder_label
col_span_str = 'colspan="4"'
elif folder.workflows:
if folder.description:
folder_label = "%s - %s" % ( folder_label, folder.description )
else:
folder_label = "%s - click the name to view an SVG image of the workflow" % folder_label
col_span_str = 'colspan="4"'
elif folder.valid_data_managers:
if folder.description:
folder_label = "%s - %s" % ( folder_label, folder.description )
col_span_str = 'colspan="3"'
elif folder.invalid_data_managers:
if folder.description:
folder_label = "%s - %s" % ( folder_label, folder.description )
col_span_str = 'colspan="2"'
%>
|
<%
my_row = row_counter.count
row_counter.increment()
%>
%endif
%for sub_folder in folder.folders:
${render_folder( sub_folder, pad, parent=my_row, row_counter=row_counter, is_root_folder=False, render_repository_actions_for=render_repository_actions_for )}
%endfor
%for readme in folder.readme_files:
${render_readme( readme, pad, my_row, row_counter, render_repository_actions_for=render_repository_actions_for )}
%endfor
%for invalid_repository_dependency in folder.invalid_repository_dependencies:
${render_invalid_repository_dependency( invalid_repository_dependency, pad, my_row, row_counter, render_repository_actions_for=render_repository_actions_for )}
%endfor
%for index, repository_dependency in enumerate( folder.repository_dependencies ):
<% row_is_header = index == 0 %>
${render_repository_dependency( repository_dependency, pad, my_row, row_counter, row_is_header, render_repository_actions_for=render_repository_actions_for )}
%endfor
%for invalid_tool_dependency in folder.invalid_tool_dependencies:
${render_invalid_tool_dependency( invalid_tool_dependency, pad, my_row, row_counter, render_repository_actions_for=render_repository_actions_for )}
%endfor
%for index, tool_dependency in enumerate( folder.tool_dependencies ):
<% row_is_header = index == 0 %>
${render_tool_dependency( tool_dependency, pad, my_row, row_counter, row_is_header, render_repository_actions_for=render_repository_actions_for )}
%endfor
%if folder.valid_tools:
%for index, tool in enumerate( folder.valid_tools ):
<% row_is_header = index == 0 %>
${render_tool( tool, pad, my_row, row_counter, row_is_header, render_repository_actions_for=render_repository_actions_for )}
%endfor
%endif
%for invalid_tool in folder.invalid_tools:
${render_invalid_tool( invalid_tool, pad, my_row, row_counter, render_repository_actions_for=render_repository_actions_for )}
%endfor
%if folder.workflows:
%for index, workflow in enumerate( folder.workflows ):
<% row_is_header = index == 0 %>
${render_workflow( workflow, pad, my_row, row_counter, row_is_header, render_repository_actions_for=render_repository_actions_for )}
%endfor
%endif
%if folder.datatypes:
%for index, datatype in enumerate( folder.datatypes ):
<% row_is_header = index == 0 %>
${render_datatype( datatype, pad, my_row, row_counter, row_is_header, render_repository_actions_for=render_repository_actions_for )}
%endfor
%endif
%if folder.valid_data_managers:
%for index, data_manager in enumerate( folder.valid_data_managers ):
<% row_is_header = index == 0 %>
${render_valid_data_manager( data_manager, pad, my_row, row_counter, row_is_header, render_repository_actions_for=render_repository_actions_for )}
%endfor
%endif
%if folder.invalid_data_managers:
%for index, data_manager in enumerate( folder.invalid_data_managers ):
<% row_is_header = index == 0 %>
${render_invalid_data_manager( data_manager, pad, my_row, row_counter, row_is_header, render_repository_actions_for=render_repository_actions_for )}
%endfor
%endif
%if folder.test_environments:
%for test_environment in folder.test_environments:
${render_test_environment( test_environment, pad, my_row, row_counter, render_repository_actions_for=render_repository_actions_for )}
%endfor
%endif
%if folder.failed_tests:
%for failed_test in folder.failed_tests:
${render_failed_test( failed_test, pad, my_row, row_counter, render_repository_actions_for=render_repository_actions_for )}
%endfor
%endif
%if folder.not_tested:
%for not_tested in folder.not_tested:
${render_not_tested( not_tested, pad, my_row, row_counter, render_repository_actions_for=render_repository_actions_for )}
%endfor
%endif
%if folder.passed_tests:
%for passed_test in folder.passed_tests:
${render_passed_test( passed_test, pad, my_row, row_counter, render_repository_actions_for=render_repository_actions_for )}
%endfor
%endif
%if folder.missing_test_components:
%for missing_test_component in folder.missing_test_components:
${render_missing_test_component( missing_test_component, pad, my_row, row_counter, render_repository_actions_for=render_repository_actions_for )}
%endfor
%endif
%if folder.tool_dependency_installation_errors:
%for tool_dependency_installation_error in folder.tool_dependency_installation_errors:
${render_tool_dependency_installation_error( tool_dependency_installation_error, pad, my_row, row_counter, render_repository_actions_for=render_repository_actions_for )}
%endfor
%endif
%if folder.tool_dependency_successful_installations:
%for tool_dependency_successful_installation in folder.tool_dependency_successful_installations:
${render_tool_dependency_successful_installation( tool_dependency_successful_installation, pad, my_row, row_counter, render_repository_actions_for=render_repository_actions_for )}
%endfor
%endif
%if folder.repository_installation_errors:
%for repository_installation_error in folder.repository_installation_errors:
${render_repository_installation_error( repository_installation_error, pad, my_row, row_counter, is_current_repository=False, render_repository_actions_for=render_repository_actions_for )}
%endfor
%endif
%if folder.current_repository_installation_errors:
%for repository_installation_error in folder.current_repository_installation_errors:
${render_repository_installation_error( repository_installation_error, pad, my_row, row_counter, is_current_repository=True, render_repository_actions_for=render_repository_actions_for )}
%endfor
%endif
%if folder.repository_successful_installations:
%for repository_successful_installation in folder.repository_successful_installations:
${render_repository_successful_installation( repository_successful_installation, pad, my_row, row_counter, render_repository_actions_for=render_repository_actions_for )}
%endfor
%endif
%def>
<%def name="render_datatype( datatype, pad, parent, row_counter, row_is_header=False, render_repository_actions_for='tool_shed' )">
<%
encoded_id = trans.security.encode_id( datatype.id )
if row_is_header:
cell_type = 'th'
else:
cell_type = 'td'
%>
<${cell_type} style="padding-left: ${pad+20}px;">${datatype.extension | h}${cell_type}>
<${cell_type}>${datatype.type | h}${cell_type}>
<${cell_type}>${datatype.mimetype | h}${cell_type}>
<${cell_type}>${datatype.subclass | h}${cell_type}>
<%
my_row = row_counter.count
row_counter.increment()
%>
%def>
<%def name="render_failed_test( failed_test, pad, parent, row_counter, row_is_header=False, render_repository_actions_for='tool_shed' )">
<%
from tool_shed.util.basic_util import to_html_string
encoded_id = trans.security.encode_id( failed_test.id )
%>
Tool id: ${failed_test.tool_id | h} |
Tool version: ${failed_test.tool_id | h} |
Test: ${failed_test.test_id | h} |
Stderr: ${ to_html_string( failed_test.stderr ) } |
Traceback: ${ to_html_string( failed_test.traceback ) } |
|
<%
my_row = row_counter.count
row_counter.increment()
%>
%def>
<%def name="render_invalid_data_manager( data_manager, pad, parent, row_counter, row_is_header=False, render_repository_actions_for='tool_shed' )">
<%
encoded_id = trans.security.encode_id( data_manager.id )
if row_is_header:
cell_type = 'th'
else:
cell_type = 'td'
%>
<${cell_type} style="padding-left: ${pad+20}px;">${data_manager.index | h}${cell_type}>
<${cell_type}>${data_manager.error | h}${cell_type}>
<%
my_row = row_counter.count
row_counter.increment()
%>
%def>
<%def name="render_invalid_repository_dependency( invalid_repository_dependency, pad, parent, row_counter, render_repository_actions_for='tool_shed' )">
<%
encoded_id = trans.security.encode_id( invalid_repository_dependency.id )
%>
${ invalid_repository_dependency.error | h }
|
<%
my_row = row_counter.count
row_counter.increment()
%>
%def>
<%def name="render_invalid_tool( invalid_tool, pad, parent, row_counter, valid=True, render_repository_actions_for='tool_shed' )">
<% encoded_id = trans.security.encode_id( invalid_tool.id ) %>
%if trans.webapp.name == 'tool_shed' and invalid_tool.repository_id and invalid_tool.tool_config and invalid_tool.changeset_revision:
${invalid_tool.tool_config | h}
%else:
${invalid_tool.tool_config | h}
%endif
|
<%
my_row = row_counter.count
row_counter.increment()
%>
%def>
<%def name="render_invalid_tool_dependency( invalid_tool_dependency, pad, parent, row_counter, render_repository_actions_for='tool_shed' )">
<%
encoded_id = trans.security.encode_id( invalid_tool_dependency.id )
%>
${ invalid_tool_dependency.error | h } |
|
<%
my_row = row_counter.count
row_counter.increment()
%>
%def>
<%def name="render_missing_test_component( missing_test_component, pad, parent, row_counter, row_is_header=False, render_repository_actions_for='tool_shed' )">
<%
encoded_id = trans.security.encode_id( missing_test_component.id )
%>
Tool id: ${missing_test_component.tool_id | h} |
Tool version: ${missing_test_component.tool_version | h} |
Tool guid: ${missing_test_component.tool_guid | h} |
Missing components: ${missing_test_component.missing_components | h} |
|
<%
my_row = row_counter.count
row_counter.increment()
%>
%def>
<%def name="render_readme( readme, pad, parent, row_counter, render_repository_actions_for='tool_shed' )">
<% encoded_id = trans.security.encode_id( readme.id ) %>
|
<%
my_row = row_counter.count
row_counter.increment()
%>
%def>
<%def name="render_repository_dependency( repository_dependency, pad, parent, row_counter, row_is_header=False, render_repository_actions_for='tool_shed' )">
<%
from galaxy.util import asbool
from tool_shed.util.shed_util_common import get_repository_by_name_and_owner
encoded_id = trans.security.encode_id( repository_dependency.id )
if trans.webapp.name == 'galaxy':
if repository_dependency.tool_shed_repository_id:
encoded_required_repository_id = trans.security.encode_id( repository_dependency.tool_shed_repository_id )
else:
encoded_required_repository_id = None
if repository_dependency.installation_status:
installation_status = str( repository_dependency.installation_status )
else:
installation_status = None
repository_name = str( repository_dependency.repository_name )
repository_owner = str( repository_dependency.repository_owner )
changeset_revision = str( repository_dependency.changeset_revision )
if asbool( str( repository_dependency.prior_installation_required ) ):
prior_installation_required_str = " (prior install required)"
else:
prior_installation_required_str = ""
if trans.webapp.name == 'galaxy':
if row_is_header:
cell_type = 'th'
else:
cell_type = 'td'
rd = None
else:
# We're in the tool shed.
cell_type = 'td'
rd = get_repository_by_name_and_owner( trans.app, repository_name, repository_owner )
%>
%if trans.webapp.name == 'galaxy':
<${cell_type} style="padding-left: ${pad+20}px;">
%if row_is_header:
${repository_name | h}
%elif encoded_required_repository_id:
${repository_name | h}
%else:
${repository_name | h}
%endif
${cell_type}>
<${cell_type}>
${changeset_revision | h}
${cell_type}>
<${cell_type}>
${repository_owner | h}
${cell_type}>
<${cell_type}>
${installation_status}
${cell_type}>
%else:
%if render_repository_actions_for == 'tool_shed' and rd:
Repository ${repository_name | h} revision ${changeset_revision | h} owned by ${repository_owner | h}${prior_installation_required_str}
%else:
Repository ${repository_name | h} revision ${changeset_revision | h} owned by ${repository_owner | h}${prior_installation_required_str}
%endif
|
%endif
<%
my_row = row_counter.count
row_counter.increment()
%>
%def>
<%def name="render_table_wrap_style( table_id )">
%def>
<%def name="render_tool_dependency_installation_error( installation_error, pad, parent, row_counter, row_is_header=False, render_repository_actions_for='tool_shed' )">
<%
from galaxy.util import unicodify
encoded_id = trans.security.encode_id( installation_error.id )
%>
Type | Name | Version |
${installation_error.name | h} |
${installation_error.type | h} |
${installation_error.version | h} |
Error |
${unicodify( installation_error.error_message ) | h} |
|
<%
my_row = row_counter.count
row_counter.increment()
%>
%def>
<%def name="render_tool_dependency_successful_installation( successful_installation, pad, parent, row_counter, row_is_header=False, render_repository_actions_for='tool_shed' )">
<%
encoded_id = trans.security.encode_id( successful_installation.id )
%>
Type | Name | Version |
${successful_installation.name | h} |
${successful_installation.type | h} |
${successful_installation.version | h} |
Installation directory |
${successful_installation.installation_directory | h} |
|
<%
my_row = row_counter.count
row_counter.increment()
%>
%def>
<%def name="render_repository_installation_error( installation_error, pad, parent, row_counter, row_is_header=False, is_current_repository=False, render_repository_actions_for='tool_shed' )">
<%
from galaxy.util import unicodify
encoded_id = trans.security.encode_id( installation_error.id )
%>
%if not is_current_repository:
Tool shed | Name | Owner | Changeset revision |
${installation_error.tool_shed | h} |
${installation_error.name | h} |
${installation_error.owner | h} |
${installation_error.changeset_revision | h} |
%endif
Error |
${unicodify( installation_error.error_message ) | h} |
|
<%
my_row = row_counter.count
row_counter.increment()
%>
%def>
<%def name="render_repository_successful_installation( successful_installation, pad, parent, row_counter, row_is_header=False, is_current_repository=False, render_repository_actions_for='tool_shed' )">
<%
encoded_id = trans.security.encode_id( successful_installation.id )
%>
%if not is_current_repository:
Tool shed | Name | Owner | Changeset revision |
${successful_installation.tool_shed | h} |
${successful_installation.name | h} |
${successful_installation.owner | h} |
${successful_installation.changeset_revision | h} |
%endif
|
<%
my_row = row_counter.count
row_counter.increment()
%>
%def>
<%def name="render_not_tested( not_tested, pad, parent, row_counter, row_is_header=False, render_repository_actions_for='tool_shed' )">
<%
encoded_id = trans.security.encode_id( not_tested.id )
%>
|
<%
my_row = row_counter.count
row_counter.increment()
%>
%def>
<%def name="render_passed_test( passed_test, pad, parent, row_counter, row_is_header=False, render_repository_actions_for='tool_shed' )">
<%
encoded_id = trans.security.encode_id( passed_test.id )
%>
Tool id: ${passed_test.tool_id | h} |
Tool version: ${passed_test.tool_id | h} |
Test: ${passed_test.test_id | h} |
|
<%
my_row = row_counter.count
row_counter.increment()
%>
%def>
<%def name="render_tool( tool, pad, parent, row_counter, row_is_header, render_repository_actions_for='tool_shed' )">
<%
encoded_id = trans.security.encode_id( tool.id )
if row_is_header:
cell_type = 'th'
else:
cell_type = 'td'
%>
%if row_is_header:
${tool.name | h} |
%else:
%if tool.repository_id:
%if trans.webapp.name == 'tool_shed':
%elif trans.webapp.name == 'galaxy':
%if tool.repository_installation_status == trans.install_model.ToolShedRepository.installation_status.INSTALLED:
${tool.name | h}
%else:
${tool.name | h}
%endif
%else:
${tool.name | h}
%endif
%else:
${tool.name | h}
%endif
|
%endif
<${cell_type}>${tool.description | h}${cell_type}>
<${cell_type}>${tool.version | h}${cell_type}>
##<${cell_type}>${tool.requirements | h}${cell_type}>
<%
my_row = row_counter.count
row_counter.increment()
%>
%def>
<%def name="render_tool_dependency( tool_dependency, pad, parent, row_counter, row_is_header, render_repository_actions_for='tool_shed' )">
<%
from galaxy.util import string_as_bool
encoded_id = trans.security.encode_id( tool_dependency.id )
is_missing = tool_dependency.installation_status not in [ 'Installed' ]
if row_is_header:
cell_type = 'th'
else:
cell_type = 'td'
%>
<${cell_type} style="padding-left: ${pad+20}px;">
%if row_is_header:
${tool_dependency.name | h}
%elif trans.webapp.name == 'galaxy' and tool_dependency.tool_dependency_id:
%if tool_dependency.repository_id and tool_dependency.installation_status in [ trans.install_model.ToolDependency.installation_status.INSTALLED ]:
${tool_dependency.name | h}
%elif tool_dependency.installation_status not in [ trans.install_model.ToolDependency.installation_status.UNINSTALLED ]:
${tool_dependency.name}
%else:
${tool_dependency.name | h}
%endif
%else:
${tool_dependency.name | h}
%endif
${cell_type}>
<${cell_type}>
<%
if tool_dependency.version:
version_str = tool_dependency.version
else:
version_str = ''
%>
${version_str | h}
${cell_type}>
<${cell_type}>${tool_dependency.type | h}${cell_type}>
<${cell_type}>
%if trans.webapp.name == 'galaxy':
${tool_dependency.installation_status | h}
%endif
${cell_type}>
<%
my_row = row_counter.count
row_counter.increment()
%>
%def>
<%def name="render_test_environment( test_environment, pad, parent, row_counter, row_is_header=False, render_repository_actions_for='tool_shed' )">
<% encoded_id = trans.security.encode_id( test_environment.id ) %>
Time tested: ${test_environment.time_tested | h} |
System: ${test_environment.system | h} |
Architecture: ${test_environment.architecture | h} |
Python version: ${test_environment.python_version | h} |
Galaxy revision: ${test_environment.galaxy_revision | h} |
Galaxy database version: ${test_environment.galaxy_database_version | h} |
Tool shed revision: ${test_environment.tool_shed_revision | h} |
Tool shed database version: ${test_environment.tool_shed_database_version | h} |
Tool shed mercurial version: ${test_environment.tool_shed_mercurial_version | h} |
|
<%
my_row = row_counter.count
row_counter.increment()
%>
%def>
<%def name="render_valid_data_manager( data_manager, pad, parent, row_counter, row_is_header=False, render_repository_actions_for='tool_shed' )">
<%
encoded_id = trans.security.encode_id( data_manager.id )
if row_is_header:
cell_type = 'th'
else:
cell_type = 'td'
%>
<${cell_type} style="padding-left: ${pad+20}px;">${data_manager.name | h}${cell_type}>
<${cell_type}>${data_manager.version | h}${cell_type}>
<${cell_type}>${data_manager.data_tables | h}${cell_type}>
<%
my_row = row_counter.count
row_counter.increment()
%>
%def>
<%def name="render_workflow( workflow, pad, parent, row_counter, row_is_header=False, render_repository_actions_for='tool_shed' )">
<%
from tool_shed.util.encoding_util import tool_shed_encode
encoded_id = trans.security.encode_id( workflow.id )
encoded_workflow_name = tool_shed_encode( workflow.workflow_name )
if trans.webapp.name == 'tool_shed':
encoded_repository_metadata_id = trans.security.encode_id( workflow.repository_metadata_id )
encoded_repository_id = None
else:
encoded_repository_metadata_id = None
encoded_repository_id = trans.security.encode_id( workflow.repository_id )
if row_is_header:
cell_type = 'th'
else:
cell_type = 'td'
%>
<${cell_type} style="padding-left: ${pad+20}px;">
%if row_is_header:
${workflow.workflow_name | h}
%elif trans.webapp.name == 'tool_shed' and encoded_repository_metadata_id:
${workflow.workflow_name | h}
%elif trans.webapp.name == 'galaxy' and encoded_repository_id:
${workflow.workflow_name | h}
%else:
${workflow.workflow_name | h}
%endif
${cell_type}>
<${cell_type}>${workflow.steps | h}${cell_type}>
<${cell_type}>${workflow.format_version | h}${cell_type}>
<${cell_type}>${workflow.annotation | h}${cell_type}>
<%
my_row = row_counter.count
row_counter.increment()
%>
%def>
<%def name="render_repository_items( metadata, containers_dict, can_set_metadata=False, render_repository_actions_for='tool_shed' )">
<%
from tool_shed.util.encoding_util import tool_shed_encode
has_datatypes = metadata and 'datatypes' in metadata
has_readme_files = metadata and 'readme_files' in metadata
has_workflows = metadata and 'workflows' in metadata
datatypes_root_folder = containers_dict.get( 'datatypes', None )
invalid_data_managers_root_folder = containers_dict.get( 'invalid_data_managers', None )
invalid_repository_dependencies_root_folder = containers_dict.get( 'invalid_repository_dependencies', None )
invalid_tool_dependencies_root_folder = containers_dict.get( 'invalid_tool_dependencies', None )
invalid_tools_root_folder = containers_dict.get( 'invalid_tools', None )
missing_repository_dependencies_root_folder = containers_dict.get( 'missing_repository_dependencies', None )
missing_tool_dependencies_root_folder = containers_dict.get( 'missing_tool_dependencies', None )
readme_files_root_folder = containers_dict.get( 'readme_files', None )
repository_dependencies_root_folder = containers_dict.get( 'repository_dependencies', None )
test_environment_root_folder = containers_dict.get( 'test_environment', None )
tool_dependencies_root_folder = containers_dict.get( 'tool_dependencies', None )
tool_test_results_root_folder = containers_dict.get( 'tool_test_results', None )
valid_data_managers_root_folder = containers_dict.get( 'valid_data_managers', None )
valid_tools_root_folder = containers_dict.get( 'valid_tools', None )
workflows_root_folder = containers_dict.get( 'workflows', None )
has_contents = datatypes_root_folder or invalid_tools_root_folder or valid_tools_root_folder or workflows_root_folder
has_dependencies = \
invalid_repository_dependencies_root_folder or \
invalid_tool_dependencies_root_folder or \
missing_repository_dependencies_root_folder or \
repository_dependencies_root_folder or \
tool_dependencies_root_folder or \
missing_tool_dependencies_root_folder
class RowCounter( object ):
def __init__( self ):
self.count = 0
def increment( self ):
self.count += 1
def __str__( self ):
return str( self.count )
%>
%if readme_files_root_folder:
${render_table_wrap_style( "readme_files" )}
%endif
%if has_dependencies:
%endif
%if has_contents:
%endif
%if tool_test_results_root_folder:
${render_table_wrap_style( "test_environment" )}
%endif
%def>